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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
BLCA rs11872568 chr18:69019322 A/G SMAD2 chr18:45335328-45457517:- 0.71 6.89 2.27E-11 Box Plot
BLCA rs11872568 chr18:69019322 A/G SMAD4 chr18:48554764-48611415:+ 0.64 6.76 5.28E-11 Box Plot
BLCA rs11872568 chr18:69019322 A/G TXNL1 chr18:54264439-54318831:- 0.83 7.89 3.24E-14 Box Plot
BLCA rs11872568 chr18:69019322 A/G TXNL4A chr18:77730811-77793949:- 0.6 6.57 1.65E-10 Box Plot
BLCA rs11872568 chr18:69019322 A/G VPS4B chr18:61056423-61089716:- 0.63 7.53 3.68E-13 Box Plot
BLCA rs11877095 chr18:7934952 A/G ANKRD12 chr18:9136226-9285983:+ 0.76 6.94 1.65E-11 Box Plot
BLCA rs11877095 chr18:7934952 A/G NAPG chr18:10525902-10552758:+ 0.87 6.13 2.2E-9 Box Plot
BLCA rs11877095 chr18:7934952 A/G NDUFV2 chr18:9102628-9134343:+ 0.73 6.43 3.91E-10 Box Plot
BLCA rs11877095 chr18:7934952 A/G PTPN2 chr18:12785477-12929642:- 0.77 6.04 3.65E-9 Box Plot
BLCA rs11877522 chr18:22144236 C/T SS18 chr18:23596217-23671181:- -1.12 -6.83 3.43E-11 Box Plot
BLCA rs11878113 chr18:41148105 A/G REG1B chr2:79312156-79315145:- -0.24 -6.45 3.37E-10 Box Plot
BLCA rs11888609 chr2:120010665 A/G IWS1 chr2:128193783-128284462:- 0.86 6.35 5.94E-10 Box Plot
BLCA rs11888609 chr2:120010665 A/G LOC150776 chr2:132250386-132279149:+ 0.59 6.27 9.49E-10 Box Plot
BLCA rs11888609 chr2:120010665 A/G SMPD4 chr2:130908965-130940323:- 0.73 6.23 1.2E-9 Box Plot
BLCA rs11891400 chr2:101068721 T/C LOC285359 chr3:101431278-101432259:+ 0.39 7.34 1.3E-12 Box Plot